PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00109.112
Common NameAMTR_s00109p00114170, LOC18426680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 322aa    MW: 35682.8 Da    PI: 6.099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00109.112genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000381972351255
                                               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  evm_27.model.AmTr_v1.0_scaffold00109.112 197 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 235
                                               6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.693185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-10195247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-6195239No hitNo description
Gene3DG3DSA:4.10.280.101.0E-7199242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MNRLQSFPVQ QIMTGNPNRW NINAGGEDER KTIFQGINGS SMAAPYPPLT SLLESQEFPE  60
SWSQLLSSDL AREEDRCNYN QFFGKKMDNF ESQMLLSSSN SSLLNIKQEN IENCYGFPRR  120
NEDFQATKPS WPQNFPVNSS RSIVASFGNN ILDFSSSKRD GGQKPNENIS ECNSTAVAGS  180
SMKKPRVQTP STQFKVRKEK LGDRITALHQ LVSPFGKTDT ASVLLEAIGY IRFLQEQIEA  240
LSSPYLVRGS QVRGGCRFPE DPGQLLNESS KKRRGANDQD AEDEPKDLRS RGLCLVPLSC  300
TLPVSSDNGA DYWAPTLGSG F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182197KKPRVQTPSTQFKVRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006833385.10.0PREDICTED: transcription factor bHLH68 isoform X1
SwissprotQ8S3D16e-70BH068_ARATH; Transcription factor bHLH68
TrEMBLW1NSL60.0W1NSL6_AMBTC; Uncharacterized protein
STRINGVIT_11s0016g03560.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3780714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-69bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]